publications
publications by categories in reverse chronological order. generated by jekyll-scholar.
2025
- Method and system for spectral imaging of density, anisotropy, and orientationJan 2025US Patent 12,209,951
- Method and system for quantitative three dimensional measurement of density, anisotropy, and orientation without labelJan 2025US Patent 12,306,102
- Global organelle profiling reveals subcellular localization and remodeling at proteome scaleCell, 2025
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- Volumetric imaging of the 3D orientation of cellular structures with a polarized fluorescence light-sheet microscopeProceedings of the National Academy of Sciences, 2025
- Mapping virus infection dynamics across scales with computational imagingIn High-Throughput Biophotonics: Imaging, Spectroscopy, and Beyond X, 2025
- Mapping cell state dynamics with AI-enabled live cell imagingIn High-Throughput Biophotonics: Imaging, Spectroscopy, and Beyond X, 2025
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- Enabling long-term studies of developing organs in zebrafish through quantitative phase imaging and virtual stainingIn Quantitative Phase Imaging XI, 2025
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- Benchmarking and Evaluation of AI Models in Biology: Outcomes and Recommendations from the CZI Virtual Cells WorkshoparXiv preprint arXiv:2507.10502, 2025
- Observing biological spatio-angular structures and dynamics with statistical image reconstruction and polarized fluorescence microscopybioRxiv, 2025
- Embedding cell state dynamics via contrastive learning of representations of 3D dynamic imaging datasetsIn NeurIPS 2025 Workshop for Imageomics: Discovering Biological Knowledge from Images Using AI, 2025
- Establishment and maintenance of robust organ-scale spatio-temporal organizationIn SMT 2025, 2025
2024
- Mantis: high-throughput 4D imaging and analysis of the molecular and physical architecture of cellsPNAS nexus, 2024
- Mapping in toto immune cell dynamics during viral infection in zebrafishIn APS March Meeting Abstracts, 2024
- Three-dimensional spatio-angular fluorescence microscopy with a polarized dual-view inverted selective-plane illumination microscope (pol-diSPIM)bioRxiv, 2024
- 4D computational imaging and deep learningIn Computational Optical Imaging and Artificial Intelligence in Biomedical Sciences, 2024
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- Permittivity tensor imaging: modular label-free imaging of 3D dry mass and 3D orientation at high resolutionNature Methods, 2024
- High Throughput Imaging and Analysis of Intracellular Dynamics with Correlative Label-Free and Fluorescence Microscopy.Microscopy & Microanalysis, 2024
- waveOrder: generalist framework for label-agnostic computational microscopyarXiv preprint arXiv:2412.09775, 2024
- SulstonNet: A computational pipeline to analyze high-throughput imaging of nematode embryogenesis.In MOLECULAR BIOLOGY OF THE CELL, 2024
- Robust virtual staining of cellular landmarks in high-throughput correlative microscopyIn MOLECULAR BIOLOGY OF THE CELL, 2024
- Physics-informed computation of label-free and fluorescence microscopy data improves contrast, information content, and biophysical interpretation.In MOLECULAR BIOLOGY OF THE CELL, 2024
- DynaCLR: Contrastive Learning of Cellular Dynamics with Temporal RegularizationarXiv e-prints, 2024
2023
- Systems and methods for three-dimensional fluorescence polarization via multiview imagingJun 2023US Patent 11,680,903
- Visualizing sphingosine-1-phosphate receptor 1 (S1P1) signaling during central nervous system de-and remyelinationCellular and Molecular Neurobiology, 2023
- MultiSero: an open-source multiplex-ELISA platform for measuring antibody responses to infectionPathogens, 2023
- Development of POLArIS, a versatile probe for multi-color/multi-target orientation imaging in living cellsIn MOLECULAR BIOLOGY OF THE CELL, 2023
- AAV Immuno-Gene Therapy Delivers Vectorized Cytokines to Effectively Treat HighGrade GliomasIn MOLECULAR THERAPY, 2023
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2022
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- MultiSero: portable plate reader with on-board analysis for serosurveillance of Dengue infections with multiplex serologyIn Optics and Biophotonics in Low-Resource Settings VIII, 2022
- DynaMorph: self-supervised learning of morphodynamic states of live cellsMolecular Biology of the Cell, 2022
- Correlative imaging of the spatio-angular dynamics of biological systems with multimodal instant polarization microscopeBiomedical Optics Express, 2022
- Statistical topology of the streamlines of a two-dimensional flowJournal of Physics A: Mathematical and Theoretical, 2022
2021
- POLArIS, a versatile probe for molecular orientation, revealed actin filaments associated with microtubule asters in early embryosProceedings of the National Academy of Sciences, 2021
- Pycro-Manager: open-source software for customized and reproducible microscope controlNature methods, 2021
- Contractility, focal adhesion orientation, and stress fiber orientation drive cancer cell polarity and migration along wavy ECM substratesProceedings of the National Academy of Sciences, 2021
- Human microglia states are conserved across experimental models and regulate neural stem cell responses in chimeric organoidsCell stem cell, 2021
2020
- Scalable analysis of architecture of brain tissue with label-free imaging and deep learning (Conference Presentation)In Label-free Biomedical Imaging and Sensing (LBIS) 2020, 2020
- Revealing architectural order with quantitative label-free imaging and deep learningelife, 2020
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- uPTI: uniaxial permittivity tensor imaging of intrinsic density and anisotropy (preprint)2020
2019
- Learning Biological Structures from Birefringence images with Deep Neural NetworksIn Mathematics in Imaging, 2019
2018
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- Three-dimensional fluorophore orientation imaging with multiview polarized microscopyIn Mathematics in Imaging, 2018
2017
- Actin retrograde flow actively aligns and orients ligand-engaged integrins in focal adhesionsProceedings of the National Academy of Sciences, 2017
- Direction of actin flow dictates integrin LFA-1 orientation during leukocyte migrationNature communications, 2017
- Phase transition and liquid crystalline organization of colloidal graphene oxide as a function of pHParticle & Particle Systems Characterization, 2017
- Analysis of septin reorganization at cytokinesis using polarized fluorescence microscopyFrontiers in cell and developmental biology, 2017
- Cytokinesis in vertebrate cells initiates by contraction of an equatorial actomyosin network composed of randomly oriented filamentsElife, 2017
- Single-fluorophore orientation determination with multiview polarized illumination: modeling and microscope designOptics Express, 2017
2016
- Dissection of molecular assembly dynamics by tracking orientation and position of single molecules in live cellsProceedings of the National Academy of Sciences, 2016
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- Imaging molecular order of dynamic cytoskeletal assemblies in live cells with single molecule sensitivity.In MOLECULAR BIOLOGY OF THE CELL, 2016
2015
- Polarized light microscopy in reproductive and developmental biologyMolecular reproduction and development, 2015
- MultiFocus Polarization Microscope (MF-PolScope) for 3D polarization imaging of up to 25 focal planes simultaneouslyOptics express, 2015
- Polarized fluorescence microscopy to study cytoskeleton assembly and organization in live cellsCurrent protocols in cell biology, 2015
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- Leukocyte integrin LFA-1 is aligned and oriented by actin flow during cell migration.In MOLECULAR BIOLOGY OF THE CELL, 2015
- Three dimensional imaging of molecular order of the cytoskeleton by confocal fluorescence polarization microscopyIn MOLECULAR BIOLOGY OF THE CELL, 2015
- Position and orientation mapping of dynamic biomolecular assemblies in living cells with single molecule sensitivityIn MOLECULAR BIOLOGY OF THE CELL, 2015
- Dynamics of Polymeric Protein Assemblies in Live Cells Revealed by Fluorescence Polarization Imaging of Single MoleculesBiophysical Journal, 2015
- Actin retrograde flow orients and aligns activated, ligand-engaged integrins in focal adhesions.In MOLECULAR BIOLOGY OF THE CELL, 2015
2014
- Septin assemblies form by diffusion-driven annealing on membranesProceedings of the National Academy of Sciences, 2014
- pH dependent isotropic to nematic phase transitions in graphene oxide dispersions reveal droplet liquid crystalline phasesChemical communications, 2014
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- Molecular order in graphene-oxide suspensions and graphene-based films: What do we learn from it?In AIChE Annual Meeting 2014, 2014
- Shs1 is required for an organized septin higher order structure in vivo.In MOLECULAR BIOLOGY OF THE CELL, 2014
2013
- Polarized light imaging of birefringence and diattenuation at high resolution and high sensitivityJournal of optics, 2013
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- Fluorescent Single Molecule Orientation Imaging for Exploring 3D Architectural Dynamics of Cytoskeletal Protein Assembly in Living CellsBiophysical Journal, 2013
- 2P298 Fluorescent Single Molecule Orinetation Imaging in Living Cells (27. Bioimaging, Poster)Seibutsu Butsuri, 2013
- Application of Polarized Fluorescence Microscopy to the Assembly and Dynamics of SeptinsIn MOLECULAR BIOLOGY OF THE CELL, 2013
2012
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- Single molecule analysis of septin assemblyIn MOLECULAR BIOLOGY OF THE CELL, 2012
2011
- FAT10 mediates the effect of TNF-αin inducing chromosomal instabilityJournal of cell science, 2011
- 2M1548 Dark-field imaging of beating axoneme: Correlation between bend propagation and structural changes in the axoneme (Molecular motor 3, The 48th Annual Meeting of the Biophysical Society of Japan)Seibutsu Butsuri, 2011
- 2M1548 暗視野顕微鏡による軸糸屈曲運動イメージング: 屈曲伝播と軸糸内部構造の相関を探る (分子モーター 3, 第 49 回日本生物物理学会年会)生物物理, 2011
2010
- Phase-space representation of partially coherent imaging systems using the Cohen class distributionOptics letters, 2010
- Using the phase-space imager to analyze partially coherent imaging systems: bright-field, phase contrast, differential interference contrast, differential phase contrast, and spiral phase contrastJournal of Modern Optics, 2010
- Sample-less calibration of the differential interference contrast microscopeApplied optics, 2010
- Image Formation and Analysis of Coherent Microscopy and Beyond–Toward Better Imaging and Phase RecoveryIn Coherent Light Microscopy: Imaging and Quantitative Phase Analysis, 2010
- Phase-Space Perspective of Partially Coherent Imaging: Applications to Biological Phase MicroscopyNational University of Singapore, 2010
- Partially coherent image formation in Asymmetric Illumination-based Differential Phase Contrast (AIDPC) and phase-retrievalIn AIP Conference Proceedings, 2010
2009
- Quantitative phase-gradient imaging at high resolution with asymmetric illumination-based differential phase contrastOptics letters, 2009
- Linear Phase-gradient Imaging with Asymmetric Illumination based Differential Phase Contrast (AIDPC)In Novel Techniques in Microscopy, 2009
- Transfer function analysis of partially coherent phase imaging methods and evaluation for quantitative imagingIn Frontiers in Optics, 2009
- Full-field phase-gradient contrast methods for label-free quantitative imaging of cellular morphology: AIDPC and DICFocus on Microscopy, Krakow, Poland) URL: http://www. focusonmicroscopy. org/2009/PDF/396 Mehta. pdf, 2009
- Quantitative Phase Imaging in MicroscopyIn Fringe 2009: 6th International Workshop on Advanced Optical Metrology, 2009
- A New Phase-Correlation Based Gradient Registration Approach for Phase-retrieval with DIC and DPCIn Signal Recovery and Synthesis, 2009
2008
- Partially coherent image formation in differential interference contrast (DIC) microscopeOptics Express, 2008
- Asymmetric illumination based differential phase contrast (AI-DPC) for full-field transmission imaging of phase information in biological specimensIn Focus on Microscopy Conference Series, Osaka-Awaji, Japan, April, 2008
2004
- On wavelets and fractal modulationDhirubhai Ambani Institute of Information and Communication Technology, 2004